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tkmap - a bioTk program for drawing publication quality genetic maps.
tkmap [Tk options]
tkmap is a bioTk script for drawing and printing high quality output of genetic maps. tkmap reads in a framework map file and a confidence interval file in a simple text format and draws the implied map on a Tk canvas. This canvas may be resized, and the font used for drawing the marker labels changed. You can also generate encapsulated postscript from the map, either for printing or importing into a word processing package.
tkmap may understand the usual Tk options, it doesn't yet have any options of it's own.
The framework map file lists the linear map markers one per line, in the correct map order. After each marker (except the last) list the distance from the marker to the next. Comment lines beginning with a ``#'' character and blank lines are ignored. Marker names ending with the ``*'' character are considered to be framework markers and are printed in boldface.
EG0001 0.076 EG0002 0.048 EG0003 0.073 EG0004 0.024 EG0005 0.117 EG0006 0.058 EG0007 0.35 EG0008 0.091 EG0009 0.150 EG0010 0.199 EG0011 0.026 EG0012 0.183 EG0013CONFIDENCE INTERVAL FILE
If several markers are associated to the same interval, you can specify all their names between quotes as the first item in a line.
EG0014 EG0001 EG0008 EG0015 EG0001 EG0003 EG0016 EG0003 EG0010 EG0017 EG0009 EG0013 EG0018 EG0005 EG0007 EG0019 EG0008 EG0012 EG0020 EG0004 EG0008 EG0021 EG0001 EG0007 EG0022 EG0008 EG0011 "EG0023, EG0024" EG0001 EG0006 "EG0025, EG0026, EG0027, EG0028, EG0029" EG0010 EG0013
Humberto Ortiz Zuazaga,
University of Puerto Rico.
Internet address firstname.lastname@example.org.
University of Alaska at Fairbanks
Internet address email@example.com.
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Humberto Ortiz Zuazaga
Most recent change: 2005/2/25 at 22:36
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